ECCB 2010 NEXT-GEN SEQUENCING TUTORIAL PDF

Visualizing the next generation of sequencing data with GenomeView .. .. A .. Why inverse proteins are relatively abundant, J.-C. Nebel and C. Walawage, Protein & Peptide Letters, 17(7), Michal Nánási ([email protected] ) Website: (free download, tutorials, manual, . Next generation sequencing presents new challenges in large scale data at the European Conference of Computational Biology (ECCB) , Ghent. Tutorials, workshops and seminars To do bioinformatics well, you need to learn 3 things. ECCB Next-gen sequencing Tutorial (Thomas [email protected]).

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His current work includes downstream analysis of next-generation sequencing data in order to identify putative SNPs and indels. The Applications Track features 11 presentations, which were selected out of 31 submissions.

As a consequence, databases and software are evolving rapidly, and new algorithms are required to improve computational analyses of massive biological or biomedical datasets.

The 14 workshops preceding the ECCB main meeting were selected out of a total of 29 tutorisl, showing how popular ECCB sequencijg become as a venue for dissemination of computational biology research. Within each theme, the theme co-chairs assigned papers to expert referees, taking care to avoid any conflict of interest.

Next generation sequencing

We thank all those who provided financial support to the conference. In recent years, there has been a revolution in squencing area of DNA sequencing with the arrival of next-generation sequencing technologies. The ECCB conferences are gathering about a thousand scientists and industry staff working at the intersection of a broad range of disciplines including computer science, mathematics, biology and medicine. Current methods and applications for regulatory sequence analysis Tutorial 4: Many people contributed to the local organization of the conference, often much beyond the call of duty, and we owe them a great debt, in particular Femke Francissen and Jacintha van Beemen, both at the Dutch Techcentre for Life Sciences DTL for their relentless logistic and organizational support.

The 48 accepted papers are included in this special issue. Finally, all these efforts would be meaningless without the many participants from all over the world.

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Consequently, submissions relating to pure research were deemed out of scope. We thank all theme co-chairs for their ecxb throughout the reviewing process, for their very positive attitude in the final selection next-gfn for their valuable help in re-examining the modified submissions. Discovery yutorial statistically significant post-translational modification motifs.

Learning resources | BacPathGenomics

Gkoutos University of Birmingham, 201. To present a more unified view of where the science has gone over recent years, new to ECCB this year is that the conference presentations are divided over five broad themes: Jan Aerts received his PhD at Sequdncing University Netherlands in on the subject of chicken genome mapping and sequencing.

These technologies have resulted in a huge reduction in the cost of sequencing and has meant that many new researchers now have access to raw sequencing data.

We hope that authors of rejected manuscripts will benefit from these remarks in their future research. The conference topics span all areas of methodological developments for computational biology and innovative applications of computational methods to molecular biology and biomedicine. Participants will be provided with an overview of existing resources databases, tools and methods for detecting cis-regulatory elements in genome sequences, and generate testable hypotheses about the binding specificity of transcription factors motifs discoverytheir precise binding locations binding site predictionand their target genes target identificationand go towards regulatory networks.

BioinformaticsVolume 32, Issue 17, 1 SeptemberPages i—i, https: The ECCB edition features keynote lectures by distinguished speakers.

Each tutorial will offer participants an opportunity to learn about new areas of bioinformatics research, to get an introduction to important established topics, or to develop advanced skills in areas they are already familiar with. Today’s software and CPU time availability on clusters, super computers, and the grid allow for easy improvement of old files.

Details of the conference are available on the conference web site www. Working with next-generation sequencing data Tutorial 2: These rankings were subsequently used to assign papers to themes and to arrive at an optimally balanced distribution of submissions over the themes. In this short course, we will introduce the participants to the different next-generation sequencing technologies, show how to do some basic quality checking of the data, how to run the various next-generation alignment tools, create de novo sequence assemblies, and call variants such as SNPs, short indels, and structural variants from a reference sequence.

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ECCB The 15th European Conference on Computational Biology | Bioinformatics | Oxford Academic

Finally, the ELIXIR track proved to be a very popular addition, with 50 high-quality submissions for only 12 presentation slots. He will start an assistant-professorship at the University of Leuven in October. We also gratefully acknowledge the hard seequencing diligent work performed by the reviewers over a short period of time.

We also thank, as our further supporting sponsors, Gemeentemuseum Den Haag, where also the opening reception will be held, the Municipality of The Hague, Bayer sponsoring the morning run and The Utrecht Bioinformatics Centre next-gwn the Poster Award. It is our pleasure to thank all the people and organizations that are making ECCB a successful and high-quality conference.

Submission authors were asked to rank the five themes for fit of their paper. At least sixteen exhibitor booths will be open throughout the conference in the central conference hall, which is well connected to the other activities at ECCB: Friday, 01 April We also arranged with FResearch http: The Semantic Web is a thtorial of technologies, or a framework, which is designed to make data integration possible via the web, with the addition of a precise semantic characterization of entities and relations ontologies.

It offers participants an opportunity to learn about new seuqencing of bioinformatics research, to get an introduction to important established topics, or to develop advanced skills in areas about which they are already familiar.

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